I was able to obtain the programming files! I hope it is all there. Looks like a few large .vtp files, .smw, .sig, .spv, .usp, .ush, .umc, and a few .ir and some crestron caip pdf help files.
Here is the company that did the install if anyone knows anything about them:http://www.premierhometechnologies.com/
So my system breakdown should look like this if anyone has any suggestions:
PRO2 Professional Dual-Bus Control System
CNX-PAD8A Audio Distribution Processor
C2N-TXM Radio Tuner
Jandy RS serial interface
TPMC-10 Wireless Tablet Touch Panel
TPMC-10 Docking Station, update to Ipad eventually
3 LC1000, updated to tps-6l
Niles si-1230 12 channel amp
Integra 80.2 preamp
emotiva xpa-5 and xpa-3
Hopefully it wont be too cost prohibitive to reprogram to control the new theater equipment. Theoretically, the rest of the house should be unchanged.