I'm also starting to tweak the bass with the PEQ function on the Inuke. It works great too, so that's another option. Using PEQ in combination with the dynamic EQ gives some great results.
I highly recommend having easy access to changing the EQ in the inuke. I like to use a "dummy" laptop that uses Remote Desktop to control my PC in the other room where my minidsp is plugged into.
Of course, you could also just connect the inuke directly into a laptop. When my projector is on I'll just use a different remote keyboard and mouse to control the inuke.