Play the tones with the speakers set to "large."
When done, let us know if one speaker exhibits the resonance while the other does not and more than likely at that point have HTD send a replacement and a free return shipping label.
As for the 40hz crossover don't use that even if your EQ set it to that as EQ of all varieties makes "mistakes."
All speakers should be set to "small" with an 80hz crossover as the subwoofer has nearly flat frequency response from 80hz to about 20hz while your speakers most assuredly do not have flat frequency response from 80hz to 40hz.