I checked with my contact over there -- he said that yes, they do have a complete backup on Transtower.
After searching all the listings in the FCC LMS for KCRA I finally found what I believe is the License to Cover for the facility on the Transtower back in 2004. Lat/Lon listed in the App are correct and the antenna height is about 100m lower.
Why this doesn't show up in TV Query I have no idea. All the other licensed facilities seem to appear in TV Query. These inconsistencies in the FCC database drive me crazy. You have to have inside information to be sure what information you read is correct.