You probably have a ground loop. Why now and not before who knows, but you must have changed something in the system. You need to transformer isolate the signal between the AVR and sub with something like this:
http://www.amazon.com/Stinger-SGN20-Ground-Loop-Isolator/dp/B002ZRQ3PW/ref=pd_sim_auto_4
http://www.amazon.com/Stinger-SGN20-Ground-Loop-Isolator/dp/B002ZRQ3PW/ref=pd_sim_auto_4